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Could Not Calculate Untapped Karlin-altschul Parameters

Please verify the query sequence(s) and/or filtering options -- Michael R. I would like to perform a tblastn w... need help about blast2 Hello everyone, there is a warning after i ran blast2: [email protected]:~/Desktop$ blast... You signed in with another tab or window. have a peek at this web-site

I wrote ... Content Search Users Tags Badges Help About FAQ Access RSS Stats API Use of this site constitutes acceptance of our User Agreement and Privacy Policy. BLASTp query/options error Hello everyone, I am performing standalone blastp, I already used these commands on windows but ... Blastp -outfmt Problem With Format Specifiers Hi, I'm using the 2.2.31+ version of the blast+ executable in a bash command line to execute a b... over here

Password Register FAQ Community Calendar Today's Posts Search You are currently viewing the SEQanswers forums as a guest, which limits your access. Similar posts • Search » getting error in runing tblastn Hello group, i am trying to run tblastn of version 2.2.26+ for mapping peptides on eukaryotic ge... Terms Privacy Security Status Help You can't perform that action at this time.

Reload to refresh your session. Could anyone give me any comment on this? Help With Bioperl Remote Blast Script (Bio::Tools::Run::Remoteblast) Hi, I would like to run a blast search for a fasta file containing many (100+) seqences. It can happen that for some choices of blast parameters and some sequences, the statistics can't be calculated.

However I keep getting the error: Possibly "scipio" is not ins... Similar posts • Search » Getting warning during tblastn Dear all, I'm trying to do tblastn (ncbi-blast2-2-30+ version) using fasta sequences of protein ... HS-BLASTN should report a warning, and these sequences should be skipped. https://www.biostars.org/p/146471/ You are not using the latest blast so if possible upgrade.

User contributions on this site are licensed under the Creative Commons Attribution Share Alike 4.0 International License. Shortlisting Genes From Various Gene Prediction Methods Based On Blast Results. Because the output file is empty.   ADD REPLY • link modified 13 months ago • written 13 months ago by john • 0 It can also happen when there are i am getting the following error.

Blast Gives Cryptic Errors I have a list of proteins in fasta format (say goodProteins.fasta). click here now Warning in Genemark and maker Thanks everyone After my training with Genemark, there are two kinds of warning in the "log" out... Check the database to make sure it only has valid amino-acid characters. Ncbi Legacy Blast Usage With Tblastn/Pssm I'm trying to get a webservice for protein discovery running.

Duplicated terminal-version BLAST results Hi there! Check This Out What is the problem? 0 13 months ago by john • 0 European Union john • 0 wrote: Hello people I'm trying to run blast (blast-2.2.26) on a fasta file. I am having trouble getting blast to give me "correct" results. Please verify the query sequence(s) and/or filtering options.

I'm blasting (blastx2.2.28) my assembly to the annotated refseq. Please let me know how to... Trinity : average transcript size check + quality assessment Hello all   I have performed trinity assembly , now i want assess the quality of the the assemb... Source Psiblast Warning: Composition-Based Score Adjustment Warning: lcl|Query_1 1DCH:A|PDBID|CHAIN|SEQUENCE: Warning: Composition-based score adjustment ...

It seems to parse th... Trouble obtaining chromosome number using standalone blastn Hello, I'm having trouble obtaining the exact chromosome number, when using standalone BLAST. Powered by Biostar version 2.3.0 Traffic: 418 users visited in the last hour Latest Open RNA-Seq ChIP-Seq SNP Assembly Tutorials Tools Jobs Forum Planet All » View Posts Latest Open

Help For Blastx, No Output Untill The Program Finished I have run blastx program agaist NR with about 50,000 sequences locally.

thanx Adv Reply Quick Navigation General Help Top Site Areas Settings Private Messages Subscriptions Who's Online Search Forums Forums Home Forums The Ubuntu Forum Community Ubuntu Official Flavours Support New Hey Folks, Background: I am trying to shortlist the list of genes predicted by different gene pr... myposts blastp blast fasta • 1.0k views ADD COMMENT • link • Not following Follow via messages Follow via email Do not follow modified 13 months ago • written 13 months HesabımAramaHaritalarYouTubePlayGmailDriveTakvimGoogle+ÇeviriFotoğraflarDaha fazlasıDokümanlarBloggerKişilerHangoutsGoogle'a ait daha da fazla uygulamaOturum açınGizli alanlarGrupları veya mesajları ara Google Grupları Tartışma Forumları'nı kullanmak için lütfen tarayıcı ayarlarınızda JavaScript'i etkinleştirin ve sonra bu sayfayı yenileyin. .

when i m giving the command line - blastall -p blastp -i mixo2.fasta -d nr -o fasta.out it is showing the error --- "Could not calculate ungapped Karlin-Altschul parameters due to How to use maximum identity > 95%, length > 200 bp as search parameters for tblastn standalone version hallo guys, Could someone please suggest to me how to use following search ADD COMMENT • link written 13 months ago by Jean-Karim Heriche ♦ 7.2k Thank you for your quick answer. http://awendigital.com/could-not/could-not-calculate-ungapped-karlin-altschul-parameters.html lmrodriguezr closed this Apr 20, 2011 lmrodriguezr pushed a commit that referenced this issue Apr 20, 2011 RODRIGUEZ Luis-M Issues

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