Home > Could Not > Could Not Calculate Uncapped Karlin-altschul

Could Not Calculate Uncapped Karlin-altschul

SourceForge Browse Enterprise Blog Deals Help Create Log In or Join Solution Centers Go Parallel Resources Newsletters Cloud Storage Providers Business VoIP Providers Call Center Providers Home Browse RNAspace Bugs RNAspace Bowtie Results Not Matching The Expected Error Qualities I stumbled upon this problem when playing with different flags of bowtie. Aborted (core dumped)` HS-BLASTN ran to completion when I changed just one N to an A. Hey Folks, Background: I am trying to shortlist the list of genes predicted by different gene pr... have a peek at this web-site

Powered by Biostar version 2.3.0 Traffic: 417 users visited in the last hour [protocols] blastall error "Could not calculate ungapped Karlin-Altschul parameters" Michael R. Single Sign On provided by vBSSO Skip to content Ignore Learn more Please note that GitHub no longer supports old versions of Firefox. converting a fasta database to blastp database hello im runnnig a wwwblast software on my server i do have a fasta database and i would like to ... Sign up for the SourceForge newsletter: I agree to receive quotes, newsletters and other information from sourceforge.net and its partners regarding IT services and products.

I am interested in using Mothur for metagenomics analysis. Please verify the query sequence(s) and/or filtering options Owner lmrodriguezr commented Apr 20, 2011 Solved in branch issue13, to be merged with master soon. Please verify the query sequence(s) and/or filtering options" Could  anybody please help me to resolve the warning.

Thanks for your help in advance.   sequencing blast alignment genome • 598 views ADD COMMENT • link • Not following Follow via messages Follow via email Do not follow modified arkilis Bioinformatics 6 03-11-2014 08:56 AM Tracking blastall flacchy Bioinformatics 12 05-08-2013 08:38 AM Blastall help !!! Reload to refresh your session. Sign in to comment Contact GitHub API Training Shop Blog About © 2016 GitHub, Inc.

Check the database to make sure it only has valid amino-acid characters. Warning message in findOverlap function in R I am trying to find overlap between chicken (galGal4) repeat masker file (.rmsk), and promoter re... Ubuntu Ubuntu Insights Planet Ubuntu Activity Page Please read before SSO login Advanced Search Forum The Ubuntu Forum Community Ubuntu Official Flavours Support General Help blastall query Results 1 to 1 https://www.biostars.org/p/146471/ Ncbi Legacy Blast Usage With Tblastn/Pssm I'm trying to get a webservice for protein discovery running.

Content Search Users Tags Badges Help About FAQ Access RSS Stats API Use of this site constitutes acceptance of our User Agreement and Privacy Policy. Mothur_chimera.uchime running error Please any body help me. Convert Blastall cmd to Blast+ Hi,  I'm trying to convert an old blastall script (the older version of Blast that NCBI recommen... Given that your sequences are highly repetitive, this is likely if you have some filtering turned on, which I seem to remember blastall does by default.

about • faq • rss Community Log In Sign Up Add New Post Question: blast error invalid query/ sequence/ filtering options. http://seqanswers.com/forums/showthread.php?t=49493 Skip to content Ignore Learn more Please note that GitHub no longer supports old versions of Firefox. Please don't refer me to the similar thread on biostar, I see it, but not useful for me. Already have an account?

Please verify the query sequence(s) and/or filtering options. http://awendigital.com/could-not/could-not-calculate-ungapped-karlin-altschul-parameters.html ADD REPLY • link written 2.6 years ago by Pierre Lindenbaum ♦ 87k Guessing from your file naming, the query is nucl and the DB is protein. blastx -query Ndiv_cap300.fasta -out Ndiv_r... No, thanks FAQ Forum Quick Links Unanswered Posts New Posts View Forum Leaders FAQ Contact an Admin Forum Community Forum Council FC Agenda Forum Governance Forum Staff Ubuntu Forums Code of

lmrodriguezr closed this Apr 20, 2011 lmrodriguezr pushed a commit that referenced this issue Apr 20, 2011 RODRIGUEZ Luis-M Issues Source While rare, these sequences can occur in large short-read datasets.

However I keep getting the error: Possibly "scipio" is not ins... My... My AccountSearchMapsYouTubePlayNewsGmailDriveCalendarGoogle+TranslatePhotosMoreShoppingWalletFinanceDocsBooksBloggerContactsHangoutsEven more from GoogleSign inHidden fieldsSearch for groups or messages

blast two DNA sequence which were repeat-masked How to blast two DNA sequence that were repeat-masked using blastn.

Ncbi Legacy Blast Usage With Tblastn/Pssm I'm trying to get a webservice for protein discovery running. I built my own database and I a... In contrast, BLAST reports the following warning for the seqeuence consisting of all Ns: Warning: lcl|Query_1 test: Warning: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or This took a...

I first make a compatible dat... You signed in with another tab or window. can't get staxids with blastn megablast against nt Hi everyone, Please I really need help. have a peek here Have anyone been experienced Socrates ?

Is the following error from blastall normal? [blastall] WARNING: gi|9256636|ref|NP_061348.1|: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. I would like to perform a tblastn w... It seems to parse th...